From plant biomass to biofuels and bio-based chemicals with microbial cell factories

Maša VODOVNIK, Matevž ZLATNAR

Abstract


Global energy demands and global warming represent key challenges of the future of human society. Continous renewable energy supply is key for sustainable economy development. Waste plant biomass represent abundant source of renewable energy that can be transformed to biofuels and other value-added products, which is currently limited due to the lack of cost-effective biocatalysts. The bottleneck of this process is the degradation of structural polysaccharides of plant cell walls to soluble compounds that can be fermented to solvents or transformed to biogas via methanogenesis and can be used as biofuels or chemical raw materials. In order to replace traditional physical and chemical methods of lignocellulose pretreatment with more environmentally friendly biological approaches, native microbial enzyme systems are increasingly being explored as potential biocatalysts that could be used in these processes. Microbial enzymes are useful either as catalysts in the enzymatic hydrolysis of lignocelluloses or as components incorporated in engineered microbes for consolidated bioprocessing of lignocelluloses. The unprecedented development of tools for genetic and metabolic engineering for a wide range of microorganisms enabled significant progress in the development of microbial cell factories optimized for the producton of biofuels. One of the most promising strategies aimed towards this goal, i.e. systematic design and heterologous expression of »designer cellulosomes« in industrial solventogenic strains is adressed in detail.


Keywords


waste plant biomass; biocatalysts biofuels; solvents; microbial cell factories

Full Text:

PDF

References


Arantes, V., Saddler, J.N. (2010). Access to cellulose limits the efficiency of enzymatic hydrolysis: the role of amorphogenesis. Biotechnology for Biofuels, 3(4),. https://doi.org/10.1186/1754-6834-3-4

Arai, T., Matsuoka, S., Cho, H.-Y., Yukawa, H., Inui, M., Wong, S.-L., Doi, R.H. (2007). Synthesis of Clostridium cellulovorans minicellulosomes by intercellular complementation. Proceedings of National Academy Of Science, 104, 1456–1460. https://doi.org/10.1073/PNAS.0610740104

Argyros, D.A., Tripathi, S.A., Barrett, T.F., Rogers, S.R., Feinberg, L.F., Olson, D.G., ..., Hogsett, D.A. (2011). High ethanol titers from cellulose by using metabolically engineered thermophilic, anaerobic microbes. Applied and Environmental Microbiology, 77(23), 8288–8294. https://doi.org/10.1128/AEM.00646-1

Aro, N., Pakula, T., Penttila, M. (2005). Transcriptional regulation of plant cell wall degradation by filamentous fungi. FEMS Microbiology Reviews, 29(4), 719-739. https://doi.org/10.1016/j.femsre.2004.11.006

Azad, K., Rasul, M.G., Khan, M.M.K., Sharma, S.C. (2019). Introduction to sustainable and alternative ecofuels, in: Azad, K. (Ed.), Advances in Eco-Fuels for a Sustainable Environment, Woodhead Publishing Series in Energy. Woodhead Publishing, pp. 1–14. https://doi.org/https://doi.org/10.1016/B978-0-08-102728-8.00001-2

Burdette, L.A., Leach, S.A., Wong, H.T., Tullman-Ercek, D. (2018). Developing Gram-negative bacteria for the secretion of heterologous proteins. Microbial cell factories, 17. https://doi.org/10.1186/s12934-018-1041-5

Chen, H., Liu, J., Chang, X., Chen, D., Xue, Y., Liu, P., Lin, H., Han, S. (2017). A review on the pretreatment of lignocellulose for high-value chemicals. Fuel processing Technology, 160, 196–206. https://doi.org/https://doi.org/10.1016/j.fuproc.2016.12.007

Choi, K.R., Jiao S., Lee, S.Y. (2020). Metabolic engineering strategies toward production of biofuels. Current opinion in Chemical Biology, 59, 1–14. https://doi.org/https://doi.org/10.1016/j.cbpa.2020.02.009

Conti, J.J. (2011). International Energy Outlook. IEA: 246 str. https://www.eia.gov/outlooks/aeo/pdf/03832011.pdf (23.8.2019)

EU. (2018/2001). Directive (eu) 2018/2001 of the european parliament and of the council. Retrieved from https://eur-lex.europa.eu/eli/dir/2018/2001/oj

Hahn–Hägerdal, B., Galbe, M., Gorwa–Grauslund, M.F., Liden, G., Zacchi. G. (2006). Bio– ethanol: the fuel of tomorrow from the residues of today. Trends in Biotechnology, 24(12), 549–556. https://doi.org/10.1016/j.tibtech.2006.10.004

Huang, J., Xia, T., Li, G., Li, X., Li, Y., Wang, Y., … Wang, L. (2019). Overproduction of native endo-β-1,4-glucanases leads to largely enhanced biomass saccharification and bioethanol production by specific modification of cellulose features in transgenic rice. Biotechnology for Biofuels, 12(11). https://doi.org/10.1186/s13068-018-1351-1

Idiris, A., Tohda, H., Kumagai, H., Takegawa, K. (2010). Engineering of protein secretion in yeast: strategies and impact on protein production. Applied Microbiology and Biotechnology, 86(2), 403–417. https://doi.org/10.1007/s00253-010-2447-0

Jiang, Y., Xu, C., Dong, F., Yang, Y., Jiang, W., Yang, S. (2009). Disruption of the acetoacetate decarboxylase gene in solvent–producing Clostridium acetobutylicum increases the butanol ratio. Metabolic Engineering, 11(4–5), 284–291. https://doi.org/10.1016/j.ymben.2009.06.002

Joshi, C.P., Nookaraju, A. (2012). New Avenues of Bioenergy Production from Plants: Green Alternatives to Petroleum. Journal of Phylogenetics and Evolutionary Biology, 3, 134. https://doi.org/10.4172/2157-7463.1000134

Keegstra, K. (2010). Plant cell walls. Plant Physiology, 154, 483–486. https://doi.org/10.1104/pp.110.161240

Klein-Marcuschamer, D., Oleskowicz-Popiel, P., Simmons, B.A., Blanch, H.W. (2011). The challenge of enzyme cost in the production of lignocellulosic biofuels. Biotechnology and Bioengineering, 109(4), 1083-1087. https://doi.org/10.1002/bit.24370

Kótai, L., Szépvölgyi, J., Szilágyi, M., Zhibin, L., Baiquan, C., Sharma, V., Sharma, P.K. (2013). Biobutanol from renewable agricultural and lignocellulose resources and its perspectives as alternative of liquid fuels. In Z. Fang (ed.) Liquid, gaseous and solid biofuels– conversion techniques (pp. 199-262). Rijeka, InTech. https://doi.org/10.5772/52379

Frandsen, K.E.H., Simmons, T.J., Dupree, P., Poulsen, J.C.N., Hemsworth, G.R., Ciano, L., ... Walton, P.H. (2016). The molecular basis of polysaccharide cleavage by lytic polysaccharide monooxygenases. Nature Chemical Biology, 12, 298-303. https://doi.org/10.1038/nchembio.2029

Leis, B., Held, C., Andreeßen, B., Liebl, W., Graubner, S., Schulte, P., Schwarz, W., Zverlov, V. (2018). Optimizing the composition of a synthetic cellulosome complex for the hydrolysis of softwood pulp: Identification of the enzymatic core functions and biochemical complex characterization. Biotechnology for Biofuels, 11. https://doi.org/10.1186/s13068-018-1220-y

Levin, D., Verbeke, T., Munir, R., Islam, R., Ramachandran, U., Lal, S., Schellenberg, J., Sparling, R. (2015). Omics approaches for designing biofuel producing cocultures for enhanced microbial conversion of lignocellulosic substrates. In: M.E. Himmel, M.E. (Ed.), Direct Microbial Conversion of Biomass to Advanced Biofuels (pp. 335-363). Elsevier. https://doi.org/10.1016/B978-0-444-59592-8.00017-8

Liu, J., Shi, P., Ahmad, S., Yin, C., Liu, X., Liu, Y., Zhang, H., Xu, Q., Yan, H., & Li, Q. (2019). Co-culture of Bacillus coagulans and Candida utilis efficiently treats Lactobacillus fermentation wastewater. AMB Express, 9(1), 15. https://doi.org/10.1186/s13568-019-0743-3

Lütke-Eversloh, T. (2014). Application of new metabolic engineering tools for Clostridium acetobutylicum. Applied Microbiology and Biotechnology, 98(13), 5823-5837. https://doi.org/10.1007/s00253-014-5785-5.

Majidian, P., Tabatabaei, M., Zeinolabedini, M., Naghshbandi, M. P., Chisti, Y. (2018). Metabolic engineering of microorganisms for biofuel production. Renewable and Sustainable Energy Reviews, 82(3), 3863–3885. https://doi.org/10.1016/j.rser.2017.10.085

Malgas, S., Pletschke, B.I.(2019). The effect of an oligosaccharide reducing-end xylanase, BhRex8A, on the synergistic degradation of xylan backbones by an optimised xylanolytic enzyme cocktail. Enzyme Microbial Technology, 122, 74–81. https://doi.org/10.1016/j.enzmictec.2018.12.010

Moraïs, S., Stern, J., Kahn, A., Galanopoulou, A.P., Yoav, S., Shamshoum, ...Bayer, E. A. (2016). Enhancement of cellulosome-mediated deconstruction of cellulose by improving enzyme thermostability. Biotechnology for Biofuels, 9(164). https://doi.org/10.1186/s13068-016-0577-z

Das, M., Patra, P., Ghosh, A. (2020). Metabolic engineering for enhancing microbial biosynthesis of advanced biofuels. Renewable and Sustainable Energy Reviews, 119, 109562. https://doi.org/https://doi.org/10.1016/j.rser.2019.109562

Das Murtey, M.,&6 Ramasamy, P. (2016). Sample preparations for scanning electron microscopy – Life Sciences. In: M. Janicek & R. Kral (Eds.), Modern Electron Microscopy in Physical and Life Sciences, + IntechOpen. https://doi.org/10.5772/61720

Nevoigt E. (2008). Progress in metabolic engineering of Saccharomyces cerevisiae. Microbiology and Molecular Biology Reviews, 72(3), 379–412. https://doi.org/10.1128/MMBR.00025-07

Olson, D.G., McBride J.E., Shaw, A.J., Lynd, L.R. (2012). Recent progress in consolidated bioprocessing. Current Opinion in Biotechnology, 23(3), 396–405. https://doi.org/10.1016/j.copbio.2011.11.026

O’Sullivan, A.C. (1997). Cellulose: the structure slowly unravels. Cellulose, 4, 173–207. https://doi.org/10.1023/A:1018431705579

Pakula, T.M., Salonen K., Uusitalo, J., Penttila, M. (2005). The effect of specific growth rate on protein synthesis and secretion in the filamentous fungus Trichoderma reesei. Microbiology, 151(1), 135-143. https://doi.org/10.1099/mic.0.27458-0

Piškur, J., Langkjaer, R.B. (2004). Yeast genome sequencing: the power of comparative genomics. Molecular Microbiology, 53(2), 381–389. https://doi.org/10.1111/j.1365-2958.2004.04182.x

Plácido, J., Capareda, S. (2015). Ligninolytic enzymes: a biotechnological alternative for bioethanol production. Bioresources and Bioprocesses, 2(23). https://doi.org/10.1186/s40643-015-0049-5

Reed, B., Chen, R. (2013). Biotechnological applications of bacterial protein secretion: from therapeutics to biofuel production. Research in Microbiology, 164, 675–682. https://doi.org/https://doi.org/10.1016/j.resmic.2013.03.006

Shafiee, S., Topal, E. (2009). When will fossill fuel reserves be diminished? Energy Policy, 37(1), 181–189. https://doi.org/10.1016/j.enpol.2008.08.016

da Silva Trindade, W.R., dos Santos, R.G. (2017). Review on the characteristics of butanol, its production and use as fuel in in ternal combustion engines. Renewable & Sustainable Energy Reviews, 69, 642–651. https://doi.org/10.1016/j.rser.2016.11.213

Su, X., Chu, X., Dong, Z. (2009). Identification of elevated transcripts in a Trichoderma reesei strain expressing a chimeric transcription activator using suppression subtractive hybridization. World Journal of Microbiology and Biotechnology, 25(6), 1075-1084. https://doi.org/10.1007/s11274-009-9993-6

Subramaniam, Y., Masron, T.A., Azman, N.H.N. (2020). Biofuels, environmental sustainability, and food security: A review of 51 countries. Energy Research and Social Science, 68, 101549. https://doi.org/https://doi.org/10.1016/j.erss.2020.101549

Tsai, S.L., Oh, J., Singh, S., Chen, R., Chen, W. (2009). Functional assembly of minicellulosomes on the Saccharomyces cerevisiae cell surface for cellulose hydrolysis and ethanol production. Applied and Environmental Microbiology, 75(19), 6087–6093. https://doi.org/10.1128/AEM.01538-09

Tummala, S.B., Welker, N.E., Papoutsakis, E.T. (2003). Design of antisense RNA constructs for downregulation of the acetone formation pathway of Clostrdidium acetobutylicum. Journal of Bacteriology, 185(6), 1923–1934. https://doi.org/10.1128/JB.185.6.1923-1934.2003

Venkata Mohan, S., Modestra, J.A., Amulya, K., Butti, S.K., Velvizhi, G. (2016). A circular bioeconomy with biobased products from CO2 sequestration. Trends in Biotechnology, 34, 506–519. https://doi.org/10.1016/j.tibtech.2016.02.012

Vodovnik, M., Marinšek-Logar, R. (2010). Cellulosomes – promising supramolecular machines of anaerobic cellulolyticmicroorganisms. Acta chimica slovenica, 57, 767-774.

Willson, B.J., Kovács, K., Wilding-Steele, T., Markus, R., Winzer, K., Minton, N.P. (2016). Production of a functional cell wall-anchored minicellulosome by recombinant Clostridium acetobutylicum ATCC 824. Biotechnology for Biofuels, 9(109). https://doi.org/10.1186/s13068-016-0526-x

Xue, C., Zhao, J., Chen, L., Yang, S.T., Bai, F. (2017). Recent advances and state–of–the–art strategies in strain and process engineering for biobutanol production by Clostridium acetobutylicum. Biotechnology Advances, 35(2), 310–322. https://doi.org/10.1016/j.biotechadv.2017.01.007

Yang, X., Xu, M., Yang, S.T. (2015). Metabolic and process engineering of Clostridium cellulovorans for biofuel production from cellulose. Metabolic Engineering, 32, 39–48. https://doi.org/10.1016/j.ymben.2015.09.001

Zhang, J., Zhang, X. (2019). The thermochemical conversion of biomass into biofuels.In Verma D., Fortunati E., Jain S., Zhang X. (Eds.) Biomass, biopolymer-based materials and Bioenergy (pp. 327–368). Woodhead Publishing. https://doi.org/10.1016/B978-0-08-102426-3.00015-1




DOI: http://dx.doi.org/10.14720/aas.2020.116.1.1331

Refbacks

  • There are currently no refbacks.


Copyright (c) 2020 Maša Vodovnik, Matevž Zlatnar

Creative Commons License
This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License.

 

Acta agriculturae Slovenica is an Open Access journal published under the terms of the Creative Commons CC BY License.

                           


eISSN 1854-1941