Pošlji prispevek (e-pošta) Raziskava povezave genskih označevalcev in lastnosti korenin pri čičerki (Cicer arietinum L.)
Povzetek
Sprememba zgradbe korenin lahko izboljša pomembne agronomske lastnosti vključno s pridelkom, strpnost za sušo in odpornost na pomanjkanje hranil. Namen raziskave je bil preučiti raznolikost lastnosti korenin in najti enostavne označevalce ponavljajočih se zaporedij (SSR) povezanih z lastnostmi korenin pri čičerki (Cicer arietinum L.). Raziskava je bila opravljena na 39 različnih akcesijah čičerke. Rezultati so pokazali, da obstaja značilna spremenljivost v lastnostih korenin med genotipi čičerke. Celokupno je bilo ugotovljeno 26 alelov. 10 SSR označevalcev je dalo 26 polimorfnih prog v osmih povezanih skupinah (LG). Izsledki so pokazali, da obstaja v dednem materialu čičerke znatna variabilnost v lastnostih korenin. Z analizo zgradbe populacije so bile ugotovljene štiri podpopulacije. PsAS2, AF016458, 16549 in 19075 SSR označevalci v LG1, LG3, LG2 in LG1 povezanih skupinah so bili povezani z lastnostmi korenin. Ugotovitve raziskave prispevajo žlahtniteljem čičerke pomembne informacije za izboljšanje lastnosti korenin.
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Ahmad, F., Gaur, P., & Croser, J. (2005). Chickpea (Cicer arietinum L.). In ‘Genetic resources, chromosome engineering and crop improvement–grain legumes’.(Eds R Singh, P Jauhar) pp. 185–214. https://doi.org/10.1201/9780203489284.ch7
Akhavan, S., Shabanpour, M., & Esfahani, M. (2012). Soil compaction and texture effects on the growth of roots and shoots of wheat. Journal of Water and Soil, 26(3), 727–735. doi: 10.22067/JSW.V0I0.14941.
Beebe, S. E., Rojas‐Pierce, M., Yan, X., Blair, M. W., Pedraza, F., Munoz, F., .. & Lynch, J. P. (2006). Quantitative trait loci for root architecture traits correlated with phosphorus acquisition in common bean. Crop Science, 46(1), 413-423.
https://doi.org/10.2135/cropsci2005.0226
Benjamin, J. G., & Nielsen, D. C. (2006). Water deficit effects on root distribution of soybean, field pea and chickpea. Field Crops Research, 97(2-3), 248-253. https://doi.org/10.1016/j.fcr.2005.10.005
Bradbury, P. J., Zhang, Z., Kroon, D. E., Casstevens, T. M., Ramdoss, Y., & Buckler, E. S. (2007). TASSEL: software for association mapping of complex traits in diverse samples. Bioinformatics, 23(19), 2633 2635. https://doi.org/10.1093/bioinformatics/btm308
Breseghello, F., & Sorrells, M. E. (2006). Association mapping of kernel size and milling quality in wheat (Triticum aestivum L.) cultivars. Genetics, 172(2), 1165-1177. https://doi.org/10.1534/genetics.105.044586
Buckler IV, E. S., & Thornsberry, J. M. (2002). Plant molecular diversity and applications to genomics. Current Opinion in Plant Biology, 5(2), 107-111. https://doi.org/10.1016/S1369-5266(02)00238-8
Chandra, S., Buhariwalla, H.K., Kashiwagi, J., Harikrishna, S., Rupa Sridevi, K., Chandra, S., Buhariwalla, H. K., Kashiwagi, J., & Harikrishna, S. (2004). Identifying QTL-linked markers in marker-deficient crops. In 4th International Crop Science Congress. Markers, 2(38.1), 235.
Chen, Y., Ghanem, M. E., & Siddique, K. H. (2017). Characterising root trait variability in chickpea (Cicer arietinum L.) germplasm. Journal of Experimental Botany, 68(8), 1987-1999. https://doi.org/10.1093/jxb/erw368
de Dorlodot, S., Forster, B., Pagès, L., Price, A., Tuberosa, R., & Draye, X. (2007). Root system architecture: opportunities and constraints for genetic improvement of crops. Trends in Plant Science, 12(10), 474-481. https://doi.org/10.1016/j.tplants.2007.08.012
Doyle, J. J., & Doyle, J. L. (1987). A rapid DNA isolation procedure for small quantities of fresh leaf tissue (No. RESEARCH).
Evanno, G., Regnaut, S., & Goudet, J. (2005). Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Molecular Ecology, 14(8), 2611-2620. Gaur, P.M., Krishnamurthy, L. and Kashiwagi, J. 2008. Improving drought-avoidance root traits in chickpea (Cicer arietinum L.)-current status of research at ICRISAT. Plant Production Science, 11(1), 3-11. https://doi.org/10.1111/j.1365-294X.2005.02553.x
Fukai, S., & Hammer, G. L. (1995). Growth and yield response of barley and chickpea to water stress under three environments in southeast Queensland. II. Root growth and soil water extraction pattern. Australian Journal of Agricultural Research, 46(1), 35-48. https://doi.org/10.1071/AR9950035.
Gaur PM, Krishnamurthy L, Kashiwagi J. (2008). Improving drought-avoidance root traits in chickpea (Cicer arietinum L.)—current status of research at ICRISAT. Plant Production Science, 11(1), 3-11. https://doi.org/10.1626/pps.11.3
Ghaffari, P., Talebi, R., & Keshavarzi, F. (2014). Genetic diversity and geographical differentiation of Iranian landrace, cultivars, and exotic chickpea lines as revealed by morphological and microsatellite markers. Physiology and Molecular Biology of Plants, 20(2), 225-233. https://doi.org/10.1007/s12298-014-0223-9
Ghanem, M. E., Hichri, I., Smigocki, A. C., Albacete, A., Fauconnier, M. L., Diatloff, E., .. & Pérez-Alfocea, F. (2011). Root-targeted biotechnology to mediate hormonal signalling and improve crop stress tolerance. Plant Cell Reports, 30(5), 807-823. https://doi.org/10.1007/s00299-011-1005-2
Hajabbasi, M. A. (2001). Tillage effects on soil compactness and wheat root morphology. Journal of Agricultural Science and Technology, 3(1), 67-77.
Hajibarat, Z., Saidi, A., Hajibarat, Z., & Talebi, R. (2015). Characterization of genetic diversity in chickpea using SSR markers, start codon targeted polymorphism (SCoT) and conserved DNA-derived polymorphism (CDDP). Physiology and Molecular Biology of Plants, 21(3), 365-373. https://doi.org/10.1007/s12298-015-0306-2
Hamwieh, A., Imtiaz, M., & Malhotra, R. S. (2013). Multi-environment QTL analyses for drought-related traits in a recombinant inbred population of chickpea (Cicer arientinum L.). Theoretical and Applied Genetics, 126(4), 1025-1038. https://doi.org/10.1007/s00122-012-2034-0
Hasanabadi, T., Ardakani, M. R., Rejali, F., Paknejad, F., Eftekhari, S. A., & Zargari, K. (2010). Response of barley root characters to co-inoculation with Azospirillum lipoferum and Pseudomonas flouresence under different levels of nitrogen. American-Eurasian Journal of Agricultural and Environmental Science, 9(2), 156-162. ISSN : 1818-6769
Jaganathan, D., Thudi, M., Kale, S., Azam, S., Roorkiwal, M. & Gaur, P.M., et al. (2015). Genotyping-by-sequencing based intra-specific genetic map refines a “QTL hotspot” region for drought tolerance in chickpea. Molecular Genetics and Genomics, 290(2), 559-71. https://doi.org/10.1007/s00438-014-0932-3
Jain, D., & Chattopadhyay, D. (2010). Analysis of gene expression in response to water deficit of chickpea (Cicer arietinum L.) varieties differing in drought tolerance. BMC Plant Biology, 10(1), 1-14. https://doi.org/10.1186/1471-2229-10-24
Jha, U. C., Jha, R., Bohra, A., Parida, S. K., Kole, P. C., Thakro, V., .. & Singh, N. P. (2018). Population structure and association analysis of heat stress relevant traits in chickpea (Cicer arietinum L.). 3 Biotech, 8(1), 43. https://doi.org/10.1007/s13205-017-1057-2
Kale, S.M., Jaganathan, D., Ruperao, P., Chen, C., Punna, R., Kudapa, H., (2015). Prioritization of candidate genes in “QTL-hotspot” region for drought tolerance in chickpea (Cicer arietinum L.). Scientific Reports, 5(1),15296. https://doi.org/10.1038/srep15296
Kashiwagi, J., Krishnamurthy, L., Crouch, J. H., & Serraj, R. (2006). Variability of root length density and its contributions to seed yield in chickpea (Cicer arietinum L.) under terminal drought stress. Field Crops Research, 95(2-3), 171-181. https://doi.org/10.1016/j.fcr.2005.02.012
Kashiwagi, J., Krishnamurthy, L., Gaur, P. M., Chandra, S., & Upadhyaya, H. D. (2008). Estimation of gene effects of the drought avoidance root characteristics in chickpea (C. arietinum L.). Field Crops Research, 105(1-2), 64-69. https://doi.org/10.1016/j.fcr.2007.07.007
Keneni, G., Bekele, E., Imtiaz, M., Dagne, K., Getu, E., & Assefa, F. (2012). Genetic diversity and population structure of Ethiopian chickpea (Cicer arietinum L.) germplasm accessions from different geographical origins as revealed by microsatellite markers. Plant Molecular Biology Reporter, 30(3), 654-665. https://doi.org/10.1007/s11105-011-0374-6
Kirkegaard, J. A., Lilley, J. M., Howe, G. N., & Graham, J. M. (2007). Impact of subsoil water use on wheat yield. Australian Journal of Agricultural Research, 58(4), 303-315. https://doi.org/10.1071/AR06285
Li, Y., Ruperao, P., Batley, J., Edwards, D., Khan, T., Colmer, T. D., .. & Sutton, T. (2018). Investigating drought tolerance in chickpea using genome-wide association mapping and genomic selection based on whole-genome resequencing data. Frontiers in Plant Science, 9, 190. https://doi.org/10.3389/fpls.2018.00190
Lovelli, S., Perniola, M., Di Tommaso, T., Bochicchio, R., & Amato, M. (2012). Specific root length and diameter of hydroponically-grown tomato plants under salinity. Journal of Agronomy, 11(4), 11. https://doi.org/10.3923/ja.2012.101.106
Ludlow, M. M., & Muchow, R. C. (1990). A critical evaluation of traits for improving crop yields in water-limited environments. Advances in Agronomy, 43, 107-153. https://doi.org/10.1016/S0065-2113(08)60477-0
Mahanta, D., Rai, R. K., Mishra, S. D., Raja, A., Purakayastha, T. J., & Varghese, E. (2014). Influence of phosphorus and biofertilizers on soybean and wheat root growth and properties. Field Crops Research, 166, 1-9. https://doi.org/10.1016/j.fcr.2014.06.016
Malamy, J.E., 2005. Intrinsic and environmental response pathways that regulate root system architecture. Plant, Cell & Environment, 28(1), 67-77. https://doi.org/10.1111/j.1365-3040.2005.01306.x
Maphosa, L., Richards, M. F., Norton, S. L., & Nguyen, G. N. (2020). Breeding for abiotic stress adaptation in chickpea (Cicer arietinum L.): A comprehensive review. Crop Breeding, Genetics and Genomics, 4(3). https://doi.org/10.20900/cbgg20200015
Mugabe, D., Coyne, C. J., Piaskowski, J., Zheng, P., Ma, Y., Landry, E., ... & Abbo, S. (2019). Quantitative trait loci for cold tolerance in chickpea. Crop Science, 59(2), 573-582. https://doi.org/10.2135/cropsci2018.08.0504
Nei, M. (1973). Analysis of gene diversity in subdivided populations. Proceedings of the National Academy of Sciences, 70(12), 3321-3323. https://doi.org/10.1073/pnas.70.12.3321
Passioura, J. (2006). Increasing crop productivity when water is scarce—from breeding to field management. Agricultural Water Management, 80(1-3), 176-196. https://doi.org/10.1016/j.agwat.2005.07.012
Pritchard, J. K., Stephens, M., & Donnelly, P. (2000). Inference of population structure using multilocus genotype data. Genetics, 155(2), 945-959. https://doi.org/10.1093/genetics/155.2.945
Ramamoorthy, P., Lakshmanan, K., Upadhyaya, H. D., Vadez, V., & Varshney, R. K. (2017). Root traits confer grain yield advantages under terminal drought in chickpea (Cicer arietinum L.). Field crops research, 201, 146-161. https://doi.org/10.1016/j.fcr.2016.11.004
Rohlf, F.J. (2000). NTSYS-pc: numerical taxonomy and multivariate analysis system, version 2.1. New York: Exeter Software. https://doi.org/10.1016/j.fcr.2016.11.004
Sachdeva, S., Bharadwaj, C., Singh, R. K., Jain, P. K., Patil, B. S., Roorkiwal, M., & Varshney, R. (2020). Characterization of ASR gene and its role in drought tolerance in chickpea (Cicer arietinum L.). PloS One, 15(7), e0234550. https://doi.org/10.1371/journal.pone.0234550
Schenk, M. K., & Barber, S. A. (1979). Root characteristics of corn genotypes as related to p uptake 1. Agronomy Journal, 71(6), 921-924. https://doi.org/10.2134/agronj1979.00021962007100060006x
Sefera, T., Abebie, B., Gaur, P. M., Assefa, K., & Varshney, R. K. (2011). Characterisation and genetic diversity analysis of selected chickpea cultivars of nine countries using simple sequence repeat (SSR) markers. Crop and Pasture Science, 62(2), 177-187. https://doi.org/10.1071/CP10165
Thudi, M., Gaur, P. M., Krishnamurthy, L., Mir, R. R., Kudapa, H., Fikre, A., .. & Varshney, R. K. (2014a). Genomics-assisted breeding for drought tolerance in chickpea. Functional Plant Biology, 41(11), 1178-1190. https://doi.org/10.1071/FP13318
Thudi, M., Upadhyaya, H. D., Rathore, A., Gaur, P. M., Krishnamurthy, L., Roorkiwal, M., .. & Varshney, R. K. (2014b). Genetic dissection of drought and heat tolerance in chickpea through genome-wide and candidate gene-based association mapping approaches. Plos One, 9(5), e96758. https://doi.org/10.1371/journal.pone.0096758
Tuberosa, R., & Salvi, S. (2006). Genomics-based approaches to improve drought tolerance of crops. Trends in Plant Science, 11(8), 405-412. https://doi.org/10.1016/j.tplants.2006.06.003
Tuberosa, R., Salvi, S., Sanguineti, M. C., Landi, P., Maccaferri, M., & Conti, S. (2002). Mapping QTLs regulating morpho‐physiological traits and yield: Case studies, shortcomings and perspectives in drought‐stressed maize. Annals of Botany, 89(7), 941-963. https://doi.org/10.1093/aob/mcf134
Upadhyaya, H. D., Dwivedi, S. L., Baum, M., Varshney, R. K., Udupa, S. M., Gowda, C. L., .. & Singh, S. (2008). Genetic structure, diversity, and allelic richness in composite collection and reference set in chickpea (Cicer arietinum L.). BMC Plant Biology, 8(1), 1-12. https://doi.org/10.1186/1471-2229-8-106
Varshney, R. K., Gaur, P. M., Chamarthi, S. K., Krishnamurthy, L., Tripathi, S., Kashiwagi, J., .. & Jaganathan, D. (2013). Fast‐track introgression of “QTL‐hotspot” for root traits and other drought tolerance traits in JG 11, an elite and leading variety of chickpea. The Plant Genome, 6(3). https://doi.org/10.3835/plantgenome2013.07.0022
Varshney, R. K., Thudi, M., Nayak, S. N., Gaur, P. M., Kashiwagi, J., Krishnamurthy, L., .. & Viswanatha, K. P. (2014). Genetic dissection of drought tolerance in chickpea (Cicer arietinum L.). Theoretical and Applied Genetics, 127(2), 445-462. https://doi.org/10.1007/s00122-013-2230-6
Wasson, A. P., Rebetzke, G. J., Kirkegaard, J. A., Christopher, J., Richards, R. A., & Watt, M. (2014). Soil coring at multiple field environments can directly quantify variation in deep root traits to select wheat genotypes for breeding. Journal of Experimental Botany, 65(21), 6231-6249. https://doi.org/10.1093/jxb/eru250
Yang, T., Fang, L., Zhang, X., Hu, J., Bao, S., Hao, J., .. & Zong, X. (2015). High-throughput development of SSR markers from pea (Pisum sativum L.) based on next generation sequencing of a purified Chinese commercial variety. PLoS One, 10(10), e0139775. https://doi.org/10.1371/journal.pone.0139775
Yusuf Ali, M., Johansen, C., Krishnamurthy, L., & Hamid, A. (2005). Genotypic variation in root systems of chickpea (Cicer arietinum L.) across environments. Journal of Agronomy and Crop Science, 191(6), 464-472. https://doi.org/10.1111/j.1439-037X.2005.00177.x
Zaman-Allah, M., Jenkinson, D. M., & Vadez, V. (2011). A conservative pattern of water use, rather than deep or profuse rooting, is critical for the terminal drought tolerance of chickpea. Journal of Experimental Botany, 62(12), 4239-4252. https://doi.org/10.1093/jxb/err139
DOI: http://dx.doi.org/10.14720/aas.2021.117.3.2167
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