Micro RNA research in cattle, pig, sheep, and chicken
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Abd El Naby W.S., Hagos T.H., Hossain M.M., Salilew-Wondim D., Gad A.Y., Rings F., Cinar M.U., Tholen E., Looft C., Schellander K., Hoelker M., Tesfaye D. 2011. Expression analysis of regulatory microRNAs in bovine cumulus oocyte complex and preimplantation embryos. Zygote, 21, 1: 31–51. doi:10.1017/S0967199411000566
Bannister S.C., Smith C.A., Roeszler K.N., Doran T.J., Sinclair A.H., Tizard M.L. 2011. Manipulation of estrogen synthesis alters MIR202* expression in embryonic chicken gonads. Biology of Reproduction, 85, 1: 22–30. doi:10.1095/biolreprod.110.088476
Bartel D.P. 2004. MicroRNAs: genomics, biogenesis, mechanism, and function. Cell, 116, 2: 281–297. doi:10.1016/S0092-8674(04)00045-5
Berry C., Thomas M., Langley B., Sharma M, Kambadur R. 2002. Single cysteine to tyrosine transition inactivates the growth inhibitory function of Piedmontese myostatin. American Journal of Physiology Cell Physiology, 283, 1: C135–C141. doi:10.1152/ajpcell.00458.2001
Chen C., Deng B., Qiao M., Zheng R., Chai J., Ding Y., Peng J., Jiang S. 2012. Solexa sequencing identification of conserved and novel microRNAs in backfat of Large White and Chinese Meishan pigs. Plos One, 7, 2: e31426. doi:10.1371/journal.pone.0031426
Cirera S., Birck M., Busk P.K., Fredholm M. 2010. Expression profiles of miRNA-122 and its target CAT1 in minipigs (Sus scrofa) fed a high-cholesterol diet. Comparative Medicine, 60, 2: 136–141
Clop A., Marcq F., Takeda H., Pirottin D., Tordoir X., Bibé B., Bouix J., Caiment F., Elsen J.M., Eychenne F., Larzul C., Laville E., Meish F., Milenkovic D., Tobin J., Charlier C., Georges M. 2006. A mutation creating a potential illegitimate microRNA target site in the myostatin gene affects muscularity in sheep. Natural Genetics, 38, 7: 813–818. doi:10.1038/ng1810
Cutting A.D., Bannister S.C., Doran T.J., Sinclair A.H., Tizard M.V., Smith C.A. 2012. The potential role of microRNAs in regulating gonadal sex differentiation in the chicken embryo. Chromosome Research, 20, 1: 201–213. doi:10.1007/s10577-011-9263-y
Fatima A., Morris D.G. 2013. MicroRNAs in domestic livestock. Physiological Genomics, 45, 16: 685–696. doi:10.1152/physiolgenomics.00009.2013
Georges M., Coppieters W., Charlier C. 2007. Polymorphic miRNA-mediated gene regulation: contribution to phenotypic variation and disease. Current Opinion in Genetics and Development, 17, 3: 166–176. doi:10.1016/j.gde.2007.04.005
Guan Y.J., Yang X., Wei L., Chen Q. 2011. MiR-365: a mechanosensitive microRNA stimulates chondrocyte differentiation through targeting histone deacetylase 4. The Journal of Federation of American Societies for Experimental Biology, 25, 12: 4457–4466. doi:10.1096/fj.11-185132
Guduric-Fuchs J., O’Connor A., Cullen A., Harwood L., Medina R.J., O’Neill C.L., Stitt A.W., Curtis T.M., Simpson D.A. 2012. Deep sequencing reveals predominant expression of miR-21 amongst the small non-coding RNAs in retinal microvascular endothelial cells. Journal of Cellular Biochemistry, 113, 6: 2098–2111. doi:10.1002/jcb.24084
Holley C., Topkara V. 2011. An introduction to small non-coding RNAs: miRNA and snoRNA. Cardiovascular Drugs and Therapy, 25, 2: 151–159. doi:10.1007/s10557-011-6290-z
Hou X., Tang Z., Liu H., Wang N., Ju H., Li K. 2012. Discovery of MicroRNAs associated with myogenesis by deep sequencing of serial developmental skeletal muscles in pigs. Plos One, 7, 12: e52123
Hutvagner G., McLachlan J., Pasquinelli A.E., Balint E., Tuschl T., Zamore P.D. 2001. A cellular function for the RNA-interference enzyme Dicer in the maturation of the let-7 small temporal RNA. Science, 293, 5531: 834–838. doi:10.1126/science.1062961
Izumi H., Kosaka N., Shimizu T., Sekine K., Ochiya T., Takase M. 2012. Bovine milk contains microRNA and messenger RNA that are stable under degradative conditions. Journal of Dairy Science, 95, 9: 4831–4841. doi:10.3168/jds.2012-5489
Jeong W., Kim J.M., Ahn S., Lee S., Bazer F., Han J., Song G. 2012. AHCYL1 is mediated by estrogen-induced ERK1/2 MAPK cell signaling and microRNA regulation to effect functional aspects of the avian oviduct. Plos One, 7, 11: e49204
Jin W., Dodson M.V., Moore S.S., Basarab J.A., Guan L.L. 2010. Characterization of microRNA expression in bovine adipose tissues: a potential regulatory mechanism of subcutaneous adipose tissue development. BMC Molecular Biology, 11, 29: 1–8. doi:10.1186/1471-2199-11-29
Khvorova A., Reynolds A., Jayasena S.D. 2003. Functional siRNAs and miRNAs exhibit strand bias. Cell, 115, 2: 209–216. doi:10.1016/S0092-8674(03)00801-8
Kim D., Song J., Jin E.J. 2010. MicroRNA-221 regulates chondrogenic differentiation through promoting proteosomal degradation of slug by targeting Mdm2. Journal of Biological Chemistry, 285, 35: 26900–26907. doi:10.1074/jbc.M110.115105
Kim D., Song J., Kim S., Chun C.H., Jin E.J. 2011a. MicroRNA-34a regulates migration of chondroblast and IL-1beta-induced degeneration of chondrocytes by targeting EphA5. Biochemical and Biophysical Research Communications, 415, 4: 551–557. doi:10.1016/j.bbrc.2011.10.087
Kim D., Song J., Kim S., Kang S.S., Jin E.J. 2011b. MicroRNA-142-3p regulates TGF-beta3-mediated region-dependent chondrogenesis by regulating ADAM9. Biochemical and Biophysical Research Communications, 414, 4: 653–659. doi:10.1016/j.bbrc.2011.09.104
Kim D., Song J., Kim S., Park H.M., Chun C.H., Sonn J., Jin E.J. 2012. MicroRNA-34a modulates cytoskeletal dynamics through regulating RhoA/Rac1 cross-talk in chondroblasts. Journal of Biological Chemistry, 287, 15: 12501–12509. doi:10.1074/jbc.M111.264382
Kim H.K., Lee Y.S., Sivaprasad U., Malhotra A., Dutta A. 2006. Muscle-specific microRNA miR-206 promotes muscle differentiation. Journal of Cell Biology, 174, 5: 677–687. doi:10.1083/jcb.200603008
Kozomara A., Griffiths Jones S. 2014. miRBase: annotating high confidence microRNAs using deep sequencing data. Nucleic Acids Research, 42: D68–D73. doi:10.1093/nar/gkt1181
Lawless N., Vegh P., O’Farrelly C., Lynn D.J. 2014. The role og microRNAs in bovine infection and immunity. Frontiers in Immunology, 5, 611: 1–7
Lee J.Y., Jeong W., Lim W., Kim J., Bazer F.W., Han J.Y., Song G. 2012. Chicken pleiotrophin: regulation of tissue specific expression by estrogen in the oviduct and distinct expression pattern in the ovarian carcinomas. Plos One, 7, 4: e34215
Lee S.I., Lee B.R., Hwang Y.S., Lee H.C., Rengaraj D., Song G., Park T.S., Han J.Y. 2011. MicroRNA-mediated posttranscriptional regulation is required for maintaining undifferentiated properties of blastoderm and primordial germ cells in chickens. Proceedings of the National Academy of Sciences of the United States of America, 108, 26: 10426–10431. doi:10.1073/pnas.1106141108
Lee Y., Jeon K, Lee J.T., Kim S., Kim V.N. 2002. MicroRNA maturation stepwise prcessing and subcellular localization. The European Molecular Biology Organization Journal, 21, 17: 4663–4670. doi:10.1093/emboj/cdf476
Lei B., Gao S., Luo L.F., Xia X.Y., Jiang S.W., Deng C.Y., Xiong Y.Z., Li F.E. 2011. A SNP in the miR-27a gene is associated with litter size in pigs. Molecular Biology Reports, 38, 6: 3725–3729. doi:10.1007/s11033-010-0487-2
Li G., Li Y., Li X., Ning X., Li M., Yang G. 2011. MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing. Journal of Cellular Biochemistry, 112, 5: 1318–1328. doi:10.1002/jcb.23045
Li H., Zhang Z., Zhou X., Wang Z., Wang G., Han Z. 2011. Effects of microRNA-143 in the differentiation and proliferation of bovine intramuscular preadipocytes. Molecular Biology Reports, 38, 7: 4273–4280. doi:10.1007/s11033-010-0550-z
Li H., Sun G.R., Lv S.J., Wei Y., Han R.L., Tian Y.D., Kang X.T. 2012. Association study of polymorphisms inside the miR1657 seed region with chicken growth and meat traits. British Poultry Science, 53, 6: 770–776. doi:10.1080/00071668.2012.750716
Li H., Sun G.R., Tian Y.D., Han R.L., Li G.X., Kang X.T. 2013. MicroRNAs-1614-3p gene seed region polymorphisms and association analysis with chicken production traits. Journal of Applied Genetics, 54, 2: 209–213. doi:10.1007/s13353-013-0142-4
Li T., Wu R., Zhang Y., Zhu D. 2011. A systematic analysis of the skeletal muscle miRNA transcriptome of chicken varieties with divergent skeletal muscle growth identifies novel miRNAs and differentially expressed miRNAs. BMC Genomics, 12, 186: 1–20. doi:10.1186/1471-2164-12-186
Lian C., Sun B., Niu S., Yang R., Liu B., Lu C., Meng J., Qiu Z., Zhang L., Zhao Z. 2012. A comparative profile of the microRNA transcriptome in immature and mature porcine testes using Solexa deep sequencing. The Federation of European Biochemical Societies Journal, 279, 6: 964–975. doi:10.1111/j.1742-4658.2012.08480.x
Lindsay M.A. 2008. MicroRNAs and the immune response. Trends in Immunology, 29, 7: 343–351. doi:10.1016/j.it.2008.04.004
Lingenfelter B.M., Tripurani S.K., Tejomurtula J., Smith G.W., Yao J. 2011. Molecular cloning and expression of bovine nucleoplasmin 2 (NPM2): a maternal effect gene regulated by miR-181a. Reproductive Biology and Endocrinology, 9, 40: 1–9. doi:10.1186/1477-7827-9-40
Maak S., Boettcher D., Komolka K., Tetens J., Wimmers K., Reinsch N., Swalve H.H., Thaller G. 2010. Exclusion of sequence polymorphisms in the porcine ITGA5 and MIR148B loci as causal variation for congenital splay leg in piglets. Animal Genetics, 41, 4: 447–448
McDaneld T.G. 2009. MicroRNA mechanism of gene regulation and application to livestock. Journal of Animal Science, 87, 14: E21–E28. doi:10.2527/jas.2008-1303
Miles J.R., McDaneld T.G., Wiedmann R.T., Cushman R.A., Echternkamp S.E., Vallet J.L., Smith T.P. 2012. MicroRNA expression profile in bovine cumulus-oocyte complexes: possible role of let-7 and miR-106a in the development of bovine oocytes. Animal Reproduction Science, 130, 1–2: 16–26
Miretti S., Martignani E., Taulli R., Bersani F., Accornero P., Baratta M. 2011. Differential expression of microRNA-206 in skeletal muscle of female Piedmontese and Friesian cattle. Veterinary Journal, 190, 3: 412–413. doi:10.1016/j.tvjl.2010.12.012
Mondou E., Dufort I., Gohin M., Fournier E., Sirard M.A. 2012. Analysis of microRNAs and their precursors in bovine early embryonic development. Molecular Human Reproduction, 18, 9: 425–434. doi:10.1093/molehr/gas015
Muramatsu H., Zou P., Kurosawa N., Ichihara-Tanaka K., Maruyama K., Inoh K., Sakai T., Chen L., Sato M., Muramatsu T. 2006. Female infertility in mice deficient in midkine and pleiotrophin, which form a distinct family of growth factors. Genes Cells, 11, 12: 1405–1417. doi:10.1111/j.1365-2443.2006.01028.x
Naeem A., Zhong K., Moisa S., Drackley J., Moyes K., Loor J. 2012. Bioinformatics analysis of microRNA and putative target genes in bovine mammary tissue infected with Streptococcus uberis. Journal of Dairy Science, 95, 11: 6397–6408. doi:10.3168/jds.2011-5173
Naguibneva I., Ameyar-Zazoua M., Polesskaya A., Ait-Si-Ali S., Groisman R., Souidi M., Cuvellier S., Harel-Bellan A. 2006. The microRNA miR-181 targets the homeobox protein Hox-A11 during mammalian myoblast differentiation. Nature Cell Biology, 8, 3: 278–284. doi:10.1038/ncb1373
Rengaraj D., Lee B.R., Lee S.I., Seo H.W., Han J.Y. 2011. Expression patterns and miRNA regulation of DNA methyltransferases in chicken primordial germ cells. Plos One, 6, 5: e19524
Romao J.M., Jin W., He M., McAllister T., Guan le L. 2012. Altered microRNA expression in bovine subcutaneous and visceral adipose tissues from cattleunder different diet. PLoS One, 7, 7: e40605
Stowe H.M., Curry E., Calcatera S.M., Krisher R.L., Paczkowski M., Pratt S.L. 2012. Cloning and expression of porcine Dicer and the impact of developmental stage and culture conditions on microRNA expression in porcine embryos. Gene, 501, 2: 198–205. doi:10.1016/j.gene.2012.03.058
Sweetman D., Rathjen T., Jefferson M., Wheeler G., Smith T. G., Wheeler G.N., Munsterberg A., Dalmay T. 2006. FGF-4 signaling is involved in mir-206 expression in developing somites of chicken embryos. Developmental Dynamics, 235, 8: 2185–2191. doi:10.1002/dvdy.20881
Tang Z., Liang R., Zhao S., Wang R., Huang R., Li K. 2014. CNN3 is reguleted by microRNA-1 during muscle development in pigs. International Journal of Biological Sciences, 10, 4: 377–385. doi:10.7150/ijbs.8015
Torley K.J., da Silveira J.C., Smith P., Anthony R.V., Veeramachaneni D.N., Winger Q.A., Bouma G.J. 2011. Expression of miRNAs in ovine fetal gonads: potential role in gonadal differentiation. Reproductive Biology and Endocrinology, 9, 2: 1–11. doi:10.1186/1477-7827-9-2
Townley-Tilson W.H., Callis T.E., Wang D. 2010. MicroRNAs 1, 133, and 206: critical factors of skeletal and cardiac muscle development, function, and disease. The International Journal of Biochemistry and Cell Biology, 42, 8: 1252–1255. doi:10.1016/j.biocel.2009.03.002
Trakooljul N., Hicks J.A., Liu H.C. 2010. Identification of target genes and pathways associated with chicken microRNA miR-143. Animal Genetics, 41, 4: 357–364
Tripurani S.K., Lee K.B., Wee G., Smith G.W., Yao J. 2011. MicroRNA-196a regulates bovine newborn ovary homeobox gene (NOBOX) expression during early embryogenesis. BMC Developmental Biology, 11, 25: 1–9. doi:10.1186/1471-213x-11-25
Wang X., Gu Z., Jiang H. 2013. MicroRNAs in farm animals. Animal, 7, 10: 1567–1575. doi:10.1017/S1751731113001183
Wang X.G., Yu J.F., Zhang Y., Gong D.Q., Gu Z.L. 2012. Identification and characterization of microRNA from chicken adipose tissue and skeletal muscle. Poultry Science, 91, 1: 139–149. doi:10.3382/ps.2011-01656
Xu S., Linher-Melville K., Yang B.B., Wu D., Li J. 2011. Micro-RNA378 (miR-378) regulates ovarian estradiol production by targeting aromatase. Endocrinology, 152, 10: 3941–3951. doi:10.1210/en.2011-1147
Yan X., Huang Y., Zhao J.X., Rogers C.J., Zhu M.J., Ford S.P., Nathanielsz P.W., Du M. 2013. Maternal obesity downregulates microRNA let-7g expression, a possible mechanism for enhanced adipogenesis during ovine fetal skeletal muscle development. International Journal of Obesity, 37, 4: 568–575. doi:10.1038/ijo.2012.69
Zhao S., Zhang J., Hou X., Zan L., Wang N., Tang Z., Li K. 2012. OLFML3 expression is decreased during prenatal muscle development and regulated by microRNA-155 in pigs. International Journal of Biological Sciences, 8, 4: 459–469. doi:10.7150/ijbs.3821
Zorc M., Omejec S., Tercic D., Holcman A., Dovc P., Kunej T. 2015. Catalog of genetic variants within mature microRNA seed regions in chicken. Poultry Science, 94, 9: 2037–2040. doi:10.3382/ps/pev170
DOI: http://dx.doi.org/10.14720/aas.2015.106.1.2
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